PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0493.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family E2F/DP
Protein Properties Length: 487aa    MW: 52745.7 Da    PI: 4.9596
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0493.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.24.5e-26167232171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           r+++sL+llt+kf++l++++++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn+i wkg
  Bostr.23794s0493.1.p 167 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIDLIEKPFKNRILWKG 232
                           6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-28163234IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-16167230IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-32167232IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.2E-23169232IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.25E-32245349No hitNo description
CDDcd146604.02E-49245349No hitNo description
PfamPF164217.4E-33248347IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSGIVRSSPG SSQQPPPPPH HPPSSPSPVT STPVVPPIRR HLAFASTKPP FHPSDDYHRF  60
TPSSLSNNSD RSFVNGCGVV DREEDAVVVR SPSRKRKSTM DVVVAPSNNG FTSSGLTSIP  120
SSPCQTPAKG GRVNIKSKAK GNKSTPQTPI STNAGSPVTL TPSGSCRYDS SLGLLTKKFV  180
NLIKQAKDGM LDLNKAAETL EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDASSPGD  240
VDADVSVLQA EIENLALEEQ ALDNQIRQTE ERLRDLSENE KNQKWLFVTE EDIKSLPGFQ  300
NQTLIAVKAP HGTTLEVPDP DEAVDHPQRR YRIILRSTMG PIDVYLVSEF EGKFEDTNGS  360
VAPPACLPIA SSSGSTGHHD IEALTVDNTG TAIEHQVSHD HAHPQPGDTS DLNYLQEQVG  420
GMLKITPSDV ENDDSDYWLL SNAEISMTDI WKTDSGIDWD YGIADVSTPP PVMGEIAPTA  480
VDSTPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-23162233274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00293DAPTransfer from AT2G36010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2425820.0AF242582.1 Arabidopsis thaliana E2F transcription factor-3 E2F3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879589.10.0E2F transcription factor-3
SwissprotQ9FNY00.0E2FA_ARATH; Transcription factor E2FA
TrEMBLD7LIM90.0D7LIM9_ARALL; E2F transcription factor-3
STRINGfgenesh2_kg.4__1634__AT2G36010.30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.10.0E2F transcription factor 3