PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0047.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 213aa    MW: 24940.8 Da    PI: 9.1512
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-1499188282
                           EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEE CS
                    B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvv 81 
                           +k+l++sdv k  +rl+l+k+ ++e        ++++ ++ +++++ ++g++ ++k++ +++ ++ vlt+GWkeFv+  +L    Df++
  Bostr.23794s0047.1.p  99 KKQLMSSDVKKDqSRLMLSKQQVKETmlpfleeSENPSRGLDVSVYGPNGKVQDMKFKLWNGNNTPVLTSGWKEFVEKYDLVmISDFIT 187
                           699*******9989**********99*****9977888999*********888888888**********************98899987 PP

                           E CS
                    B3  82 F 82 
                            
  Bostr.23794s0047.1.p 188 V 188
                           5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.07E-1598203No hitNo description
SMARTSM010197.3E-898203IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1699204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-1799192IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-8100188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MATSTGETTC LTQEEEEVHV AACILMDISQ AHQKQSRKRK DADKNQRKKV KKQNMMKISM  60
EYFSEETRRL IEVWYKTEPD PQEIFSDDEV TRQFSKPLKK QLMSSDVKKD QSRLMLSKQQ  120
VKETMLPFLE ESENPSRGLD VSVYGPNGKV QDMKFKLWNG NNTPVLTSGW KEFVEKYDLV  180
MISDFITVWM FRHIRTGKIC FVIDCHRFPL KK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865781.11e-100hypothetical protein ARALYDRAFT_918037
SwissprotQ9ZR141e-93Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLD7MQ421e-100D7MQ42_ARALL; Putative uncharacterized protein
STRINGscaffold_801437.11e-100(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.19e-95B3 family protein