PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2199s0044.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 108aa    MW: 12512.8 Da    PI: 10.2178
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2199s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26059.59.4e-19199524100
               DUF260  24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                          ++++ +++n+++lFG+ n++++++++p+e+++++++s+++ ++++a+dPv+G +++++kl ++++  ka l++l+e+
  Bostr.2199s0044.1.p  19 KNKNCEYKNANELFGTPNIIRMMRRTPKEKKHMLATSIIMDGNMWAKDPVSGGFSMMRKLMWEIKLRKAYLHELEEK 95 
                          566789*****************************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.062196IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-141892IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MEAFGADVNR GRCSVCTTKN KNCEYKNANE LFGTPNIIRM MRRTPKEKKH MLATSIIMDG  60
NMWAKDPVSG GFSMMRKLMW EIKLRKAYLH ELEEKVKEVK EKTELRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2199s0044.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409041.24e-35LOW QUALITY PROTEIN: LOB domain-containing protein 8
SwissprotQ9C8V81e-35LBD5_ARATH; LOB domain-containing protein 5
TrEMBLR0GAE32e-33R0GAE3_9BRAS; Uncharacterized protein
STRINGBostr.2199s0044.1.p2e-74(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36000.19e-38LOB domain-containing protein 5