PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.21132s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 120aa    MW: 12829.3 Da    PI: 7.5226
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.21132s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.61.9e-291491273
                   TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec 73
                          a  +++++++h kvggRdRR+Rl+a++a ++F L++eLGf +d++t+ WLl++a+pai ++tg++ +++       +c
  Bostr.21132s0005.1.p 14 ARTTTSSKDRHVKVGGRDRRIRLPASVAPQLFNLTKELGFQTDGETVGWLLRNAEPAIFAATGLGVNHSifsdnsIRC 91
                          5567899*********************************************************77777332221223 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-251884IPR005333Transcription factor, TCP
PROSITE profilePS5136924.1832074IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MDSRKEMNNI QKAARTTTSS KDRHVKVGGR DRRIRLPASV APQLFNLTKE LGFQTDGETV  60
GWLLRNAEPA IFAATGLGVN HSIFSDNSIR CLETELEAAG YETATDASSA ATTTATTTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495849.11e-41PREDICTED: transcription factor TCP16-like
SwissprotQ9M1U41e-38TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL89e-39D7LNL8_ARALL; Putative uncharacterized protein
TrEMBLR0HIU48e-39R0HIU4_9BRAS; Uncharacterized protein (Fragment)
STRINGscaffold_501366.13e-38(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.14e-39TCP domain protein 16