PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.21132s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 172aa    MW: 19271.3 Da    PI: 9.5294
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.21132s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP44.27.1e-141371466
                   TCP  4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..s 66
                          ++++ +++h kvggRdRR+Rl+a++a ++  L++eLGf +d++t      +  +   ++tg   +
  Bostr.21132s0002.1.p 13 ATRSLKDRHVKVGGRDRRIRLPASVAPQLSNLTKELGFQTDGET------KCRARHFAATGHgvN 71
                          567789*************************************5......777777777777542 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-121656IPR005333Transcription factor, TCP
PROSITE profilePS513699.6581771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MDSRNEINNR QKATRSLKDR HVKVGGRDRR IRLPASVAPQ LSNLTKELGF QTDGETKCRA  60
RHFAATGHGV NTTPNDVIHS NKKFQNYTNC GNNHPINIDG DNVDINNFFP YTGINTGNHE  120
MVCPVTTKTY YATSSTFPAK DRVDVSGESS QNQKQQQQQS HPQFELVWVL N*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495849.11e-52PREDICTED: transcription factor TCP16-like
SwissprotQ9M1U43e-43TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL82e-52D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.15e-52(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.12e-41TCP domain protein 16