PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0012.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 278aa    MW: 31373 Da    PI: 5.4711
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202677156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g+
  Bostr.20903s0012.1.p 26 CQYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAALKLYGH 77
                          68*****999.**********965...5*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-142677IPR001471AP2/ERF domain
CDDcd000181.77E-312686No hitNo description
SuperFamilySSF541711.24E-212785IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-302785IPR001471AP2/ERF domain
PROSITE profilePS5103223.0642784IPR001471AP2/ERF domain
SMARTSM003801.5E-362790IPR001471AP2/ERF domain
PRINTSPR003673.2E-102839IPR001471AP2/ERF domain
PRINTSPR003673.2E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDEA ALKLYGHEAY LNLPHLQRNT RPSLSNSQRF KWVPSRKFIS MFPSCGMLNV  120
NAQPSVHIIQ QRLEELKKTG LLSQSYSSSS SSTESKTNTS LVDEKTSKGE TNNMFEGGDQ  180
KKPEIDLTEF LQQLGIFKDE SHAEASEVAE CQSPPLWNEQ EETGSPFGAQ NFSWDTLIEM  240
PRSETATMQF DFSNFGSYDF EDDVSFPSIW DYCGSLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-182784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0012.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272170.0AK227217.1 Arabidopsis thaliana mRNA for AP2 transcription factor - like protein, complete cds, clone: RAFL09-96-P04.
GenBankAL0496600.0AL049660.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8.
GenBankAY0872430.0AY087243.1 Arabidopsis thaliana clone 332 mRNA, complete sequence.
GenBankBT0289450.0BT028945.1 Arabidopsis thaliana At3g57600 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504692.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX50.0DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLR0FPV40.0R0FPV4_9BRAS; Uncharacterized protein
STRINGBostr.20903s0012.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-170ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]