PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2021s0045.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 225aa    MW: 26152.9 Da    PI: 9.5797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2021s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.7e-12117158351
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                           +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  Bostr.2021s0045.1.p 117 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 158
                          79**96.5.7*********6.....6********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.71794171IPR001471AP2/ERF domain
PfamPF008471.8E-6116159IPR001471AP2/ERF domain
SMARTSM003805.1E-7116173IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9117161IPR016177DNA-binding domain
CDDcd000187.59E-12118169No hitNo description
Gene3DG3DSA:3.30.730.101.0E-8118162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVSLRRRRLL GLCCGPNGYV TQLPFLTAEE MITGIPNPNA RAAYNPGPAE TVKPAIEEIM  60
PIEEGSRRTR SKHMQFRSDY SDMSPVDSDS ISPKYQPLKR RKQHRRKQVH NQEPCLMRGV  120
YYKNMKWQAA IKVEKRQIHL GTFSSQEEAA RLYDRAAFMC GREPNFALSE EDKRELKQQS  180
WVEFLACTRR TITNKKPKRR IEHEDKVINA SMLRCPPEEE EEQE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2021s0045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216240.0AK221624.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450270.11e-137PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP91e-120ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLF4JS761e-117F4JS76_ARATH; Integrase-type DNA-binding superfamily protein
STRINGBostr.2021s0045.1.p1e-168(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-120ERF family protein