PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20129s0200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 252aa    MW: 28026.6 Da    PI: 4.6756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20129s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-184090155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ykGVr ++ +g+Wv eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Bostr.20129s0200.1.p 40 KKYKGVRMRS-WGSWVTEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90
                          59*****998.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-174099No hitNo description
SMARTSM003805.7E-3441104IPR001471AP2/ERF domain
PROSITE profilePS5103221.8124198IPR001471AP2/ERF domain
PfamPF008471.2E-114190IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-194199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-304199IPR001471AP2/ERF domain
PRINTSPR003676.2E-94253IPR001471AP2/ERF domain
PRINTSPR003676.2E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVKQELKIQI TTSSSSLSHS SSSSSSSSTL HHQSSKNKIK KYKGVRMRSW GSWVTEIRAP  60
NQKTRIWLGS YSTAEAAARA YDAALLCLKG PKANLNFPHI TTTSPFLMDI DEKTLLSPKS  120
IQKVAAQAAN SFSSDDPFTP PSDDDDHDHD DGLHHHPSPS ISAASSPPDD DHHNDDNHLD  180
DDDGDLVSLM ESFVDYNEHV SLMDPSWYEF DHNEMLFTNG APFDYSPQLI SSKTTMDDFY  240
DDADIQLWNF T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1441991473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00246DAPTransfer from AT1G77640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20129s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107040.0AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence.
GenBankAY5608430.0AY560843.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77640) mRNA, complete cds.
GenBankBT0126290.0BT012629.1 Arabidopsis thaliana At1g77640 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891531.11e-108ethylene-responsive transcription factor ERF013
SwissprotQ9CAP41e-101ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLA0A178WBA41e-107A0A178WBA4_ARATH; Uncharacterized protein
STRINGBostr.20129s0200.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.18e-57ERF family protein