PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19427s0055.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 223aa    MW: 25557.8 Da    PI: 7.9879
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19427s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.47.1e-09127173349
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                           ++++ +r+++NRe+A+rsR R +  ie+L+++   L  eN++L ++l
  Bostr.19427s0055.1.p 127 DDRKRKRMESNRESAKRSRMRQQRHIENLKNETNRLGLENRELGNRL 173
                           57899************************************998665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.0E-13125189IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-8126173No hitNo description
PROSITE profilePS502179.714127173IPR004827Basic-leucine zipper domain
PfamPF001704.5E-7128174IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-9129178No hitNo description
CDDcd147021.30E-14130177No hitNo description
PROSITE patternPS000360132147IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMSTVPAFSF TEPGLVNQIS DFQTGFTPWE LDCSDLFSII DHEPAVPSPC SGESETGSVK  60
INTGFHGFDE SCIGSIKANS GSDDFDIFHG VPSPQSGELD SDNTRIRINP KDHNRKKLNR  120
SVLQVTDDRK RKRMESNRES AKRSRMRQQR HIENLKNETN RLGLENRELG NRLRIVMYNI  180
ELICTDNNRL LSEQEILRRR FLEMRQILIL RQLQQNPSLI IK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114132RKKLNRSVLQVTDDRKRKR
2141146KRSRMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0047860.0AC004786.3 Arabidopsis thaliana chromosome 2 clone T20K9 map CIC06C07, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankBT0116490.0BT011649.1 Arabidopsis thaliana At2g22850 mRNA, complete cds.
GenBankBT0109290.0BT010929.1 Arabidopsis thaliana At2g22850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880465.11e-144bZIP transcription factor family protein
TrEMBLD7LE491e-144D7LE49_ARALL; BZIP transcription factor family protein
STRINGscaffold_400242.11e-144(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-131basic leucine-zipper 6