PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0807.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 428aa    MW: 48746.4 Da    PI: 7.0095
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0807.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.41.7e-401453102136
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssa 70 
                           + ++drhski T+ g RdRR+Rls+++a++fF Lqd+LGfdk+skt+eWLl+qakp+i+++++t                    s +++
  Bostr.19424s0807.1.p 145 PSRTDRHSKIKTANGTRDRRMRLSLDVAKEFFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTfshqcgfssgdeshtrpalgSMDTS 233
                           5799************************************************************9888888887777666666633333 PP

                   TCP  71 seceaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                           s+  + +s  +++  +s+           + ++   k+k+++ ++    +l+k++rakar+ra++rt  km++k ++
  Bostr.19424s0807.1.p 234 SDLCDLASMLTVDDRGSNtnttetrgnkvDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMVKMMMKGRS 310
                           333222222222222222445566777876666666888888888888*************************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-42146307IPR005333Transcription factor, TCP
PROSITE profilePS5136931.655147205IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.604286303IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNNNTFSTTT TVYDDYMLFP YNDHYSSQPV LSFGPSSSIN DILIHSTSNT SNNHLDHHHH  60
QFLQPSPFSQ FEFVPDCALL ASFLPQNNGH DDNQTIANDN RHPSLLLHLN NGDQPTEPSE  120
TITHIEDSQT ISTSQDPKMK KAKKPSRTDR HSKIKTANGT RDRRMRLSLD VAKEFFGLQD  180
MLGFDKASKT VEWLLTQAKP EIIKIAKTFS HQCGFSSGDE SHTRPALGSM DTSSDLCDLA  240
SMLTVDDRGS NTNTTETRGN KVDGRSMRGK RKRPEPRTPI LKKLSKDERA KARERAKDRT  300
MVKMMMKGRS QLVKVVEEEV HDQGEIVKND ISEVNRSSFE VTHCQEEIEE LCKNDRFAVC  360
NDFVMNKKDH ISNESYDIIN KLNSSFPMIN HHRSQGEANS IEQHQFTDLH HFLAKPKDLM  420
YNYQNMC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19424s0807.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0625810.0EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642531.10.0transcription factor TCP18 isoform X1
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLR0G5220.0R0G522_9BRAS; Uncharacterized protein
STRINGBostr.19424s0807.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.10.0TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]