PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19424s0744.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 263aa    MW: 30190.1 Da    PI: 9.4206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19424s0744.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.4e-16125214198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+k +++s+v+   +l lp +f+++h  +k ++ ++tl de+ +++  k+  +k++    l++GW++F  +++L +gD vvF+l+  + 
  Bostr.19424s0744.1.p 125 FVKPMLQSHVTGGFWLGLPHHFCKAHL-PK-RDEMMTLVDEEDEEFVAKYLAEKNG----LSGGWRGFSIDHQLVDGDAVVFHLITPTM 207
                           89**********************995.33.5569***************666666....***********************997655 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           f  +v ++r
  Bostr.19424s0744.1.p 208 F--KVYIIR 214
                           5..777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-19116215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24118216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-25123214No hitNo description
SMARTSM010192.9E-20125216IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969125216IPR003340B3 DNA binding domain
PfamPF023622.7E-14125214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVDSELSYEQ IRLNRVEENK KRMEELNLNK LAQSLGVSSS PKPSPAKPRT VRMPSDFLEV  60
RRSSRAKGPP PSYKEFGLEP LERPRRSYQR RDLLNRVYAS DEARMYAFDR AEKLQSSLDP  120
EFPSFVKPML QSHVTGGFWL GLPHHFCKAH LPKRDEMMTL VDEEDEEFVA KYLAEKNGLS  180
GGWRGFSIDH QLVDGDAVVF HLITPTMFKV YIIRVNDDAN NDSDGNEEYK ESDIKSNKKQ  240
EENVSVARQL RSNGKRKRGG RK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4875610.0DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.
GenBankAB4936210.0AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466051.11e-159PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M31e-145Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLR0I0401e-157R0I040_9BRAS; Uncharacterized protein
STRINGAT3G19184.11e-143(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-134B3 family protein