PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19046s0098.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 239aa    MW: 25271.4 Da    PI: 9.0363
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19046s0098.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.2e-40551561101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq++
  Bostr.19046s0098.2.p  55 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVA 143
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                           +l+ael++++++l
  Bostr.19046s0098.2.p 144 SLQAELSVVQSQL 156
                           *********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.21654156IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3955153IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MFGDMADQQR AHNTSDSRRK SLAGKRTSQQ TPTSSLSSGG GAMAVATSGT GTTSPCGACK  60
FLRRKCVSGC IFAPHFGSDQ GAARFAAVHK VFGASNVSKL LHHIPVNRRH DAVVTISYEA  120
QARLSDPVYG CVSTILALQQ QVASLQAELS VVQSQLINSR VAMANVMQQQ THHQQQQQLV  180
VMQQPEYSNN SSASTTLAGA AMNSFTVAAE AAAISYDVIA PANLEHPLQP PMPPHQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-39461582113LOB family transfactor Ramosa2.1
5ly0_B2e-39461582113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19046s0098.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882305.11e-138LOB domain-containing protein 20
SwissprotQ9SRV31e-134LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD7L1941e-137D7L194_ARALL; LOB domain protein 20
STRINGBostr.19046s0098.1.p1e-152(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-105LOB domain-containing protein 20