PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19046s0098.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 259aa    MW: 27719.2 Da    PI: 8.3943
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19046s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.14.4e-3655144189
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq e
  Bostr.19046s0098.1.p  55 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQKE 143
                           7***********************9989**********************************************************987 PP

                DUF260  89 q 89 
                           +
  Bostr.19046s0098.1.p 144 E 144
                           6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.61854156IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3655145IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFGDMADQQR AHNTSDSRRK SLAGKRTSQQ TPTSSLSSGG GAMAVATSGT GTTSPCGACK  60
FLRRKCVSGC IFAPHFGSDQ GAARFAAVHK VFGASNVSKL LHHIPVNRRH DAVVTISYEA  120
QARLSDPVYG CVSTILALQQ QKEELITCWF RRLLVDDDVN TVASLQAELS VVQSQLINSR  180
VAMANVMQQQ THHQQQQQLV VMQQPEYSNN SSASTTLAGA AMNSFTVAAE AAAISYDVIA  240
PANLEHPLQP PMPPHQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-35461452100LOB family transfactor Ramosa2.1
5ly0_B4e-35461452100LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19046s0098.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738541e-163AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182911e-163AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
GenBankATAC0095401e-163AC009540.6 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence.
GenBankCP0026861e-163CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882305.11e-133LOB domain-containing protein 20
SwissprotQ9SRV31e-129LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD7L1941e-131D7L194_ARALL; LOB domain protein 20
STRINGBostr.19046s0098.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-112LOB domain-containing protein 20