PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18473s0137.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family E2F/DP
Protein Properties Length: 346aa    MW: 39115.5 Da    PI: 8.7669
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18473s0137.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP49.76e-162432571
               E2F_TDP 25 vtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                          + l+++a++L    v  +rRRiYDi+NVLe+++++++++kn+++wkg
  Bostr.18473s0137.2.p  2 IGLDDAASKL---GV--ERRRIYDIVNVLESVGVLTRRAKNQYTWKG 43
                          789*******...9*..****************************98 PP

2E2F_TDP80.11.9e-25113193171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                           r+eksL+lltq+f+kl+ +se++i++l+e+ak L+ +      +++k+RR+YDi+NVL+++nliek     ++k++++w g
  Bostr.18473s0137.2.p 113 RREKSLGLLTQNFIKLFVCSEARIISLDEAAKLLLGDahntsIMRTKVRRLYDIANVLSSMNLIEKthtldSRKPAFKWLG 193
                           689**************************************999************************9999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.0E-6143IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-16144IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.36E-11244IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.2E-14243IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-23110194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-32113193IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.81E-14115194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.6E-20115193IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MIGLDDAASK LGVERRRIYD IVNVLESVGV LTRRAKNQYT WKGFAAIPGA LKELQEEGVK  60
DTFHRFYVNE NVKGSDDEDD DEESSQPHSS SQADSSKPGS LPHSSDSSKI DNRREKSLGL  120
LTQNFIKLFV CSEARIISLD EAAKLLLGDA HNTSIMRTKV RRLYDIANVL SSMNLIEKTH  180
TLDSRKPAFK WLGYNGEPTF TLSSDLMQME SRKRAFGTDL TNVNIKRSKS SSSSQENATE  240
RRLKMKKNTT PESSYYKSFD VHESRHGSRG YQFGPFAPGS GTYPTAAMED NSRRAFDVEN  300
LVSDYHPSYQ NQVLKDLFSH YMDAWKTWYS EVTQKNPLPN TSQHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-34218532228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0055240.0BT005524.1 Arabidopsis thaliana clone U20743 putative DP-E2F protein 1 (At3g48160) mRNA, complete cds.
GenBankBT0042580.0BT004258.1 Arabidopsis thaliana clone RAFL15-19-A14 (R20743) putative DP-E2F protein 1 (At3g48160) mRNA, complete cds.
GenBankAB0745330.0AB074533.1 Arabidopsis thaliana mRNA for E2F-like repressor E2L3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875881.10.0hypothetical protein ARALYDRAFT_485177
SwissprotQ8LSZ40.0E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLD7LRJ40.0D7LRJ4_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__1169__AT3G48160.20.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.20.0DP-E2F-like 1