PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.18351s0037.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 225aa    MW: 25705.3 Da    PI: 10.3757
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.18351s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.6e-1819113199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffk l   dv+++++  lp +f+++++  ke s ++++++++grsWev +   k+++  ++ ++GW++Fv++n      f++++++g++
  Bostr.18351s0037.1.p  19 FFKMLQGIDVSSENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVGI--FKNPRFyFMEKSGWEKFVRDNAFGHSKFITLTHKGKM 104
                           8999999****************99965.57899****************..999999556669*********************9999 PP

                           EE..EEEEE-S CS
                    B3  89 efelvvkvfrk 99 
                           +f  +v +f++
  Bostr.18351s0037.1.p 105 QF--TVNIFKQ 113
                           99..9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-1813115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-1814118IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-1618112No hitNo description
SMARTSM010191.5E-1619114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.54819114IPR003340B3 DNA binding domain
PfamPF023627.3E-1619113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MTRNPEFVRG KEERNNESFF KMLQGIDVSS ENMRALPHDF VRSFSDKELS CKMKIRTQWG  60
RSWEVGIFKN PRFYFMEKSG WEKFVRDNAF GHSKFITLTH KGKMQFTVNI FKQDGKEMIQ  120
PPQSAAFLAS SSSIKIESEE NDKKEEKVVS SHGRKLKFGK KPAEESQNSK RAKKLVCVRR  180
GSAGASSSTG AKFTIFIKKS YISADTEICC KVESNVQDPS SRWE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026882e-71CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0133942e-71AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488975.11e-104PREDICTED: B3 domain-containing protein At2g16210-like
SwissprotQ5BPT71e-84Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1432e-99D7L143_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.3__3493__AT2G16210.15e-99(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.22e-75B3 family protein