PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.1774s0019.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 356aa    MW: 37405.4 Da    PI: 8.5511
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.1774s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.21.4e-3848146299
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          +++k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++ +
  Bostr.1774s0019.1.p  48 TPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPPS 137
                          789******************************************************************999889999999997777633 PP

                  TCP  91 aksaakskk 99 
                          ++++  + +
  Bostr.1774s0019.1.p 138 KSFHSGRAP 146
                          333332222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-3654155IPR005333Transcription factor, TCP
PROSITE profilePS5136926.5654108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MESHQNNNTE HHHQQTSTGS AHMVPFMGPI SSSISATTTT TTVSATKTPA KRPSKDRHIK  60
VDGRGRRIRM PAICAARVFQ LTRELQHKSD GETIEWLLQQ AEPAIIAATG TGTIPANFST  120
LNVSLRSSGS TLSAPPSKSF HSGRAPQNTA VFGFQQQLYH PHHIMTDSSS LPKSFRQEDL  180
FKDPNSLDQE PGSSSPKLGS EAPDQDPGLT RSRTQNMIPP MWAVAAPTPA STNGGGSAFW  240
MLPVGGGGGP ANVQDPSQHM WAFNSGHYPG RIGSVQLGSM LVQQAAVGGQ LGLSAAESNN  300
LGLFSGGEGG GDGVYGGGGR VGLGMSLEQK PQRHQQHQVS DTHGDQNPTT IAGSP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.1774s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397460.11e-175transcription factor TCP23
SwissprotQ9LQF01e-166TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A178W5320.0A0A178W532_ARATH; TCP23
STRINGBostr.1774s0019.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.11e-163TCP family protein