PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15697s0315.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 331aa    MW: 36741.1 Da    PI: 9.048
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15697s0315.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1142e-35491642133
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgka 90 
                            g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++  +e+     +++         
  Bostr.15697s0315.1.p  49 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFDHET-----QNQ--------- 123
                           689************************************************************955555333.....222......... PP

                   TCP  91 aksaakskksqksaasalnlak.esrakarararertrekmrik 133
                            ++  +  +s +s++s l+l++ e r kar+rarert+++  ++
  Bostr.15697s0315.1.p 124 -TK--SACSSGTSESSLLSLSRtEIRGKARERARERTAKERDKD 164
                           .22..334445666667999999**************9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-3350132IPR005333Transcription factor, TCP
PROSITE profilePS5136930.78851109IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.461143161IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELDEDVEVQ KQQQQQQSRK LQRFSDDNTG IMKDWNNPSS RIIRVSRASG GKDRHSKVLT  60
SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ PSKAVEWLIN AASDSITDLP PINTNFDHET  120
QNQTKSACSS GTSESSLLSL SRTEIRGKAR ERARERTAKE RDKDLQTAQS SFTQLLTGGF  180
DQSNNRNWTG GSACFNPVQL IPNSSSSSLP QEPMNQNNHP FSFVPDHYNF GISSSSSSAL  240
NGGYSSRGTL QSNSQSLFLN NNNNITQRSS ISSSSSSSSP MDSQSISFFM AAPPPLDHHS  300
HQLPATFDGR LYLYYGEGNR NSDDKGKDRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2056110155Putative transcription factor PCF6
5zkt_B1e-2056110155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.15697s0315.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735060.0AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence.
GenBankAY0350080.0AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankAY0576720.0AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds.
GenBankAY1138980.0AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460809.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_010460810.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_010460811.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_019091815.10.0PREDICTED: transcription factor TCP24 isoform X1
RefseqXP_019091816.10.0PREDICTED: transcription factor TCP24 isoform X1
SwissprotQ9C7580.0TCP24_ARATH; Transcription factor TCP24
TrEMBLR0I1L00.0R0I1L0_9BRAS; Uncharacterized protein
STRINGBostr.15697s0315.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-133TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]