PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.15654s0048.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family E2F/DP
Protein Properties Length: 396aa    MW: 44452.8 Da    PI: 5.5333
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.15654s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.3e-27152217171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           r+++sL+llt+kf+kl++++e+g+++ln +a+ L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  Bostr.15654s0048.1.p 152 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCADVL---EV--QKRRIYDITNVLEGIGLIEKTTKNHIRWKG 217
                           6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-29148219IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-17152215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.0E-34152217IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-25154217IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.99E-40228335No hitNo description
SuperFamilySSF1440745.75E-29229334No hitNo description
PfamPF164214.4E-25233332IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRCSSLT PSSTNRPFSV PESLPNAQQS  60
PLIPSHWDDS YSQITQKVQK SRKNHRILLG SIANMSGESI DIAKVIVKQE SPQDCKRVYN  120
KSKVTKQSKA GKRMANGEAQ SGGLNATSNN CRYDSSLGLL TKKFVKLIQE AEDGTLDLNY  180
CADVLEVQKR RIYDITNVLE GIGLIEKTTK NHIRWKGADN LGQKDLGDQI ARLKSEVESM  240
QSEESRLDDL IRERQEALRS LEEDEFCRRY MFMTEEDITS LPRFQNQTLL AIKAPTASYI  300
EVPDPDEMMS FPQPHYRMVI RSRMGPIDVY LLSKYKGDSG ETSDKLGHES DQKAPSGVDT  360
PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-25152218774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2425810.0AF242581.1 Arabidopsis thaliana E2F transcription factor-2 E2F2 mRNA, complete cds.
GenBankAY0582310.0AY058231.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds.
GenBankAY0456360.0AY045636.1 Arabidopsis thaliana At1g47870/T2E6_2 mRNA, complete cds.
GenBankAJ4178340.0AJ417834.1 Arabidopsis thaliana mRNA for transcription factor E2Fc (e2Fc gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891392.10.0T2E6.2
SwissprotQ9FV700.0E2FC_ARATH; Transcription factor E2FC
TrEMBLD7KBY00.0D7KBY0_ARALL; T2E6.2
STRINGfgenesh1_pm.C_scaffold_10030090.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.10.0E2F/DP family protein