PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.1460s0172.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 259aa    MW: 27668.5 Da    PI: 8.2181
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.1460s0172.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.3e-294107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++
  Bostr.1460s0172.1.p   4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q ++e+++ +e
  Bostr.1460s0172.1.p  94 QLCQDAVEAVMKGE 107
                          ******99988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.7E-991257IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.1333109IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVMKGEPIT EIATNAATIG  120
QGPPLKIYDI RHNSKDDNSA AAAATGSTDL KRPKTRRAKR VSTVAKQAES EGKSGEASHE  180
SSLSHQSEIV ATHEGESKES ESNVSEVLAS SPPAVQGSGE IKLDLTLGLE PVSHAYDVVP  240
VKKRRIGVFG TCKTELML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160RPKTRRAKRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.1460s0172.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860610.0AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299215.11e-177LOB domain-containing protein 41
SwissprotQ9M8861e-174LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0I6Q71e-176R0I6Q7_9BRAS; Uncharacterized protein
STRINGBostr.1460s0172.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-162LOB domain-containing protein 41