PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.14547s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 218aa    MW: 23379.3 Da    PI: 5.9244
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.14547s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601247.8e-39111121101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++Cv+apyf +e+ +++fa+vhk+FGasn +kll  +p ++r da+ +l yeA ar+rdPvyG+vg+i++lq+q++
  Bostr.14547s0030.1.p  11 PCGACKFLRRKCVSECVFAPYFDSEEgTSHFAAVHKVFGASNASKLLMMIPASRRLDAVVTLSYEALARLRDPVYGCVGHIFALQHQVM 99 
                           7*********************998879************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                           +l+aela+++++l
  Bostr.14547s0030.1.p 100 NLQAELAYVQTQL 112
                           *********9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.60310112IPR004883Lateral organ boundaries, LOB
PfamPF031959.0E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSGSTTGGGG PCGACKFLRR KCVSECVFAP YFDSEEGTSH FAAVHKVFGA SNASKLLMMI  60
PASRRLDAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQAELAYVQT QLSTLQRLLP  120
PNPQNNSPTE AASSFNAPLI ASVDNKSNVS SSSSHIHCMP QQQQPKEDIE VSRESVDLST  180
LLGLEDPAEE DGDLNALTRE FVSKYLTGGQ CRSSSPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3941124111LOB family transfactor Ramosa2.1
5ly0_B2e-3941124111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.14547s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738550.0AB473855.1 Arabidopsis thaliana ASL22 mRNA for ASYMMETRIC LEAVES2-like 22 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289084.11e-141LOB domain-containing protein 31
SwissprotO813221e-123LBD31_ARATH; LOB domain-containing protein 31
TrEMBLR0FHZ71e-140R0FHZ7_9BRAS; Uncharacterized protein
STRINGBostr.14547s0030.1.p1e-160(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-113LOB domain-containing protein 31