PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0198.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 189aa    MW: 20594.1 Da    PI: 5.159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0198.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.4e-161362155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ ta++Aa+a++ a+ +l+g
  Bostr.13671s0198.1.p 13 PVYRGIR-CR-SGKWVSEIREPKK---TTRIWLGTYPTAKMAAAAYDVAAMALKG 62
                          68****9.55.6*********854...5***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-91362IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-171471IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-261472IPR001471AP2/ERF domain
SMARTSM003801.2E-261476IPR001471AP2/ERF domain
PROSITE profilePS5103219.3351470IPR001471AP2/ERF domain
CDDcd000186.01E-161572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSSDGLASRK KDPVYRGIRC RSGKWVSEIR EPKKTTRIWL GTYPTAKMAA AAYDVAAMAL  60
KGREAVLNFS ESARSYPVPV STSAADIRTA AAAAASVKGC EEREEEKEAK KNKSSSSKLR  120
ARECHVDNDV ASSSWCGTEF MDEEEVLNMP NLLANMAEGM MLAPPSWMGS RPSDDSPENS  180
NDEDLWGY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0198.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0254170.0AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBankAY5608930.0AY560893.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g12630) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ1457760.0DQ145776.1 Arabidopsis thaliana Ap2/EREBP transcription factor (At1g12630) mRNA, complete cds.
GenBankDQ4462450.0DQ446245.1 Arabidopsis thaliana clone pENTR221-At1g12630 AP2 domain-containing protein (At1g12630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889943.17e-98ethylene-responsive transcription factor ERF027
SwissprotQ38Q392e-84ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLD7KP862e-96D7KP86_ARALL; DNA binding protein
STRINGBostr.13671s0198.1.p1e-135(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.15e-66ERF family protein