PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0161.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 244aa    MW: 27333.3 Da    PI: 5.353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-172069255
                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  Bostr.13671s0161.1.p 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAAIAYDVAARSISG 69
                          799******.**********66.....34**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5342077IPR001471AP2/ERF domain
CDDcd000183.92E-292076No hitNo description
PfamPF008479.3E-112068IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-272076IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-202077IPR016177DNA-binding domain
SMARTSM003806.0E-312083IPR001471AP2/ERF domain
PRINTSPR003671.2E-82132IPR001471AP2/ERF domain
PRINTSPR003671.2E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAIAY  60
DVAARSISGS LAKTNFFYTE NISSQRQPQQ LLQSSSDKDF VNPTIMSLGP DMCLGSSSFG  120
FLQDKPPENH RFVAAPISSC LQEQQFLANL TNSFPHCYDD DHVGQSKEIS LPSFPSDMSS  180
SLFGYQDNTG EQGDAEKMKI GSVLSNDSHC FEYDYTADYL QSFLKDVNED PTQMIGFSSS  240
SFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1916841079Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0161.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934541e-102AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026841e-102CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K231e-102AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476267.11e-145PREDICTED: ethylene-responsive transcription factor ERF088-like isoform X1
SwissprotQ3E7031e-106ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLR0IIP71e-143R0IIP7_9BRAS; Uncharacterized protein
STRINGBostr.13671s0161.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-72ERF family protein