PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13671s0120.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family RAV
Protein Properties Length: 346aa    MW: 38607.3 Da    PI: 9.8904
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13671s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.41.7e-1361109155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a ++++g
  Bostr.13671s0120.1.p  61 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAVNRFRG 109
                           89****9888.8*********3.....5**********99************998 PP

2B3101.26e-32189292199
                           EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           f+k  tpsdv+k++rlv+pk++ae+h     ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+ 
  Bostr.13671s0120.1.p 189 FEKPVTPSDVGKLNRLVIPKHHAEKHfplpsSSVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSK 277
                           89****************************9888889***************************************************6 PP

                           -SSSEE..EEEEE-S CS
                    B3  85 dgrsefelvvkvfrk 99 
                           ++ ++++l++++ ++
  Bostr.13671s0120.1.p 278 SNGQDQQLYIGWKSR 292
                           655999999998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-861109IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-1761117IPR016177DNA-binding domain
CDDcd000183.00E-2661119No hitNo description
PROSITE profilePS5103220.09962117IPR001471AP2/ERF domain
SMARTSM003802.3E-2862123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2062118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.9E-42181294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-33184293IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-29187280No hitNo description
PROSITE profilePS5086314.254189293IPR003340B3 DNA binding domain
SMARTSM010194.4E-25189293IPR003340B3 DNA binding domain
PfamPF023627.1E-29189292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEVSSVDEST TSTGSICETP AITPAKKSSV GNNLYRMGSG SSVVLDSENG IEAESRKLPS  60
SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAARAY DVAVNRFRGR DAVTNFKDVR  120
MDEDEGEFLI SHSKSEIVDM LRKHTYNEEL EQSKRRRNGN GNTVRTMLTS GLSNDGVSTT  180
EFRSAEPLFE KPVTPSDVGK LNRLVIPKHH AEKHFPLPSS SVSVKGVLLN FEDVNGKVWR  240
FRYSYWNSSQ SYVLTKGWSR FVKEKNLRAG DVVSFSKSNG QDQQLYIGWK SRSGSDLVAG  300
RVLRLFGVNI SPGSLRNDVV GNKRVNDTEM ISLVCSKKQR IFHAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-7418529910124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13671s0120.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0138860.0AB013886.1 Arabidopsis thaliana mRNA for RAV1, complete cds.
GenBankAC0118100.0AC011810.8 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence.
GenBankAY0638550.0AY063855.1 Arabidopsis thaliana putative DNA-binding protein RAV1 (At1g13260) mRNA, complete cds.
GenBankAY0912910.0AY091291.1 Arabidopsis thaliana putative DNA-binding protein RAV1 (At1g13260) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476321.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLD7KQD70.0D7KQD7_ARALL; Uncharacterized protein
STRINGBostr.13671s0120.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]