PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0163.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 313aa    MW: 35201.1 Da    PI: 4.7931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0163.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-1899150156
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           ++y+GVr++k +g+++AeIrdps+   r+r++lg+f taeeAa a+++a+  l+g+
  Bostr.13158s0163.1.p  99 KKYRGVRQRK-WGKFAAEIRDPSS---RTRIWLGTFVTAEEAAVAYDRAAIHLKGH 150
                           59*******9.**********965...4***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.72E-3199156No hitNo description
SMARTSM003805.7E-35100163IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21100157IPR016177DNA-binding domain
PfamPF008473.4E-11100150IPR001471AP2/ERF domain
PROSITE profilePS5103221.694100157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-30100156IPR001471AP2/ERF domain
PRINTSPR003675.1E-10101112IPR001471AP2/ERF domain
PRINTSPR003675.1E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MERRARRVKF SEHRTVTTVA AKPSNDSPRL VRITVTDPFA TDSSSDEDNV TVAPRVKRYV  60
EEIRLCQGES SSVVATARKA KHKAEKAVLD DVSSSVKPKK YRGVRQRKWG KFAAEIRDPS  120
SRTRIWLGTF VTAEEAAVAY DRAAIHLKGH NALTNFLTPT SPTPVIDLDT VSGCDSGKDS  180
RQSLHSPTSV LRFNVNEETE YRTEHEIEPI ELSPEIKPTA LEESESSTSL LFPDPYLLPD  240
LSLAGECFWD SEIAPDLLFL DEELKIQSPL PNTKITKEEN ESEDFFFSLI EEDFESSSWD  300
VDNFFDHHHS LD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2197156262ATERF1
3gcc_A1e-2197156262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0163.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291551.10.0ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-160CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLR0H5A30.0R0H5A3_9BRAS; Uncharacterized protein
STRINGBostr.13158s0163.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-126cytokinin response factor 6