PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13158s0050.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 262aa    MW: 28943 Da    PI: 4.8978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13158s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-1875124255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++g
  Bostr.13158s0050.1.p  75 SYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAVLAIKG 124
                           6*****998.**********843...6*********************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.7E-3575138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3075133IPR001471AP2/ERF domain
PfamPF008475.0E-1275124IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2075132IPR016177DNA-binding domain
PROSITE profilePS5103222.86675132IPR001471AP2/ERF domain
CDDcd000182.77E-3076134No hitNo description
PRINTSPR003672.1E-107687IPR001471AP2/ERF domain
PRINTSPR003672.1E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEKQINIESS ATRHLDKNAS VITTFTVAAS ISSSSALTSS SESWTSSKRL LVQDNDARGK  60
RRKSNVSDNN KNPTSYRGVR MRSWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAVL  120
AIKGNSGYLN FPELSGLLPR PVSCSPKDIQ AAATKAAEAT TWQEPVIDEK LAEPEADELS  180
HSELLSTMAQ SSTSSSFVFS SDTSETSSTD KESVFDLPDL FTDGLMNRND AFCLSNGTFT  240
WQLYGDDVGF WFEEPFIWQN D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15761331573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13158s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386460.0AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankAY5608480.0AY560848.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g60490) mRNA, complete cds.
GenBankBT0294580.0BT029458.1 Arabidopsis thaliana At3g60490 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876560.11e-135ethylene-responsive transcription factor ERF035
SwissprotQ9M2101e-119ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLD7LRR01e-134D7LRR0_ARALL; Uncharacterized protein
STRINGBostr.13158s0050.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-110ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]