PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0366.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 183aa    MW: 20659.1 Da    PI: 6.0581
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0366.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.76.8e-3771071100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+ dCv++pyf  eq +++fa+vhk+FGasnv+k l +lp+++r+ a+ ++ yeA  r+rdPvyG+v++i++l+qq+ 
  Bostr.13129s0366.1.p   7 SCGACKFLRRKCNCDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLRLPQHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVV 95 
                           6***********************9978************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l++e++ l+++
  Bostr.13129s0366.1.p  96 TLQEEIEFLGSQ 107
                           ******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3566108IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAGHGSSCGA CKFLRRKCNC DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLRLPQHQ  60
RSVAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IEFLGSQMTN FSYSNQNGSQ  120
LNNIPEFMNQ VTVDTTNFVD ESLLNNDDGR NCLDGFCTNS EEMLVNHQWL QNMDYYYYAP  180
QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-3531327130LOB family transfactor Ramosa2.1
5ly0_B9e-3531327130LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0366.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738570.0AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873236.11e-127LOB domain-containing protein 33
SwissprotQ9LHS81e-121LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7LZ361e-126D7LZ36_ARALL; Predicted protein
STRINGBostr.13129s0366.1.p1e-136(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-124LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]