PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0349.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 282aa    MW: 31364.3 Da    PI: 7.0091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0349.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3109.51.5e-3443154199
                           EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                           f+k ltpsdv+k++rlv+pk++ae++              +++e+++ l++ed sg+sW+++++y+++s++yvltkGW++Fvk+++L+ 
  Bostr.13129s0349.1.p  43 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssgadTSPSEKGMLLSFEDDSGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDP 131
                           99**********************************999778889******************************************** PP

                           T-EEEEEE-SSSEE..EEEEE-S CS
                    B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                           gD+v F+++++++++l+++++r+
  Bostr.13129s0349.1.p 132 GDVVFFQRHRSDSRRLFIGWRRR 154
                           *******98889999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4039164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-3041154IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-2842145No hitNo description
SMARTSM010194.2E-2743155IPR003340B3 DNA binding domain
PROSITE profilePS5086314.39543155IPR003340B3 DNA binding domain
PfamPF023628.8E-3243154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSVNHYSTDH HTLLWQQHRH TTDTSETTTT ATWLHDDLKE SLFEKSLTPS DVGKLNRLVI  60
PKQHAEKYFP LNAVVVSSGA DTSPSEKGML LSFEDDSGKS WRFRYSYWNS SQSYVLTKGW  120
SRFVKDKQLD PGDVVFFQRH RSDSRRLFIG WRRRGQCSSS AAATNSAVNT SSMAAPYRQI  180
PASNSYSNPP FHSEYSHYGA AVATAAETHS TPSSSVGGSS RTVRLFGVNL ECQTDENDGD  240
DSVAVAAAAA VVESPDGYYG QNMYYYYSHP HNMNIAFTGE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-464016711130DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankAB0067000.0AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001119177.11e-151AP2/B3-like transcriptional factor family protein
SwissprotQ9FNI31e-153Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLR0GWN81e-143R0GWN8_9BRAS; Uncharacterized protein
STRINGAT5G06250.21e-151(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-125B3 family protein