PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0205.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 207aa    MW: 23344.8 Da    PI: 4.5238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0205.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16108158255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  Bostr.13129s0205.1.p 108 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESDVDAARAYDCAAFKLRG 158
                           7********.**********954..34**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-31107167IPR001471AP2/ERF domain
PfamPF008472.7E-11108158IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22108168IPR016177DNA-binding domain
CDDcd000184.74E-29108166No hitNo description
SMARTSM003801.1E-35108172IPR001471AP2/ERF domain
PROSITE profilePS5103224.487108166IPR001471AP2/ERF domain
PRINTSPR003673.1E-13109120IPR001471AP2/ERF domain
PRINTSPR003673.1E-13148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MATIEECSDL EAIQKHLFED LMVSDGFMGD FDFDASFVSE LWCIEPQVPK QEPDSPVFDP  60
DSFVNEFLQV EAKSSPELNS SSSTYETDLS VKKAERFEEE EAEEEARHYR GVRRRPWGKF  120
AAEIRDPAKK GSRIWLGTFE SDVDAARAYD CAAFKLRGRK AVLNFPLEAG KYEAPANSGR  180
KRKRSDVKEE LQRTQSNSSS SSCDAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-29105167264ATERF1
3gcc_A9e-29105167264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0205.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2928610.0AY292861.1 Boechera drummondii zing finger transcription factor PEI1 (PEI1), pollen specific glycine-rich protein GRP17 (GRP17), pollen specific glycine-rich protein GRP16 (GRP16), pollen specific glycine-rich protein GRP19 (GRP19), pollen specific glycine-rich protein GRP20 (GRP20), transcription-factor-like protein (Bd5g07580), and WD repeat-like protein (Bd5g07590) genes, complete cds; and oleosin (Bd5g07600) and F box protein family (Bd5g07610) genes, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452727.11e-128PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-118EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ6V5F21e-126Q6V5F2_9BRAS; AP2 transcription factor
STRINGBostr.13129s0205.1.p1e-149(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-109ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]