PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13129s0160.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 265aa    MW: 30078.4 Da    PI: 7.7859
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13129s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.39.8e-2947115371
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 
                           g+kdrhsk++T +g+RdRR+Rlsa +a++++dLq++LG+ ++sk i+WL ++ak+ ++ l+ +++++  
  Bostr.13129s0160.1.p  47 GGKDRHSKVCTVRGLRDRRIRLSAMTAIQVYDLQERLGLSQPSKVIDWLVEAAKKDVDLLPPLQFPPGF 115
                           78*************************************************************887763 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-2648148IPR005333Transcription factor, TCP
PROSITE profilePS5136927.94648106IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEMRLNSSRE DIRFKQEVDD HNQASSLSSL KQRWNNPRIV RVSRTFGGKD RHSKVCTVRG  60
LRDRRIRLSA MTAIQVYDLQ ERLGLSQPSK VIDWLVEAAK KDVDLLPPLQ FPPGFHQVNP  120
NLNGVGESFP GVFESFDLGS CSNRENLDLE KRKWVKFDQN SNLDHGFDMD HHHFSNSIQS  180
NKFYFPTTSS SGSYHYNLGH LQQYSLLDQS GNVTVAFSNN SNLNLPVVET VSSLFPRYPS  240
FLGGGQLQLF SENSNSSRQT DHVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1653107155Putative transcription factor PCF6
5zkt_B1e-1653107155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00497DAPTransfer from AT5G08070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13129s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3576121e-108AL357612.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project).
GenBankBT0299951e-108BT029995.1 Arabidopsis thaliana At5g08070 mRNA, complete cds.
GenBankCP0026881e-108CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423139.11e-159PREDICTED: transcription factor TCP17-like
SwissprotQ9LEZ91e-124TCP17_ARATH; Transcription factor TCP17
TrEMBLR0H8V51e-149R0H8V5_9BRAS; Uncharacterized protein
STRINGBostr.13129s0160.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.11e-126TCP domain protein 17
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]