PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0408.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 287aa    MW: 31412 Da    PI: 4.2586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0408.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.2e-0980125453
                   AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                            GVr ++ +g+++AeI+  +     + ++ +lg++ t +eA ka++  + ++
  Bostr.12659s0408.1.p  80 VGVRPRP-SGKFAAEIMNpF-----TkTKKWLGTYETLQEAEKAYVDKKAEY 125
                           69**999.7*********66.....3499****************9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.2E-811274IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.83E-1276118No hitNo description
SMARTSM003802.1E-477134IPR001471AP2/ERF domain
PROSITE profilePS5103212.24678136IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1080125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-1281118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKSFVKPKRL LRKVTVIVSD PDATDDSSSD ECLELPKPRK VKRIVHEITF LSEDSEISQD  60
RCNGVKTSRK KSPRQAKYPV GVRPRPSGKF AAEIMNPFTK TKKWLGTYET LQEAEKAYVD  120
KKAEYDTFAS SGSSVSSSVV SVTSQCLRSP ASASVSCVSA DDLSKEKTSL NEDVAASGDS  180
TKEVFANFDF SDLQIPDLSF LAAEDDSMVS DANGAELDFD CFLTADSDHL LDDYSLLDND  240
INISGFENSV PSELPDCDFT DMELVLGDLK FAYADQLTPP LDIAFE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0408.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792810.0AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence.
GenBankAK1191440.0AK119144.1 Arabidopsis thaliana At1g25470 mRNA for unknown protein, complete cds, clone: RAFL21-49-G19.
GenBankBT0052810.0BT005281.1 Arabidopsis thaliana At1g25470 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460372.11e-161PREDICTED: ethylene-responsive transcription factor ERF116-like
RefseqXP_010460373.11e-161PREDICTED: ethylene-responsive transcription factor ERF116-like
SwissprotQ8GW171e-136EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBLR0II301e-151R0II30_9BRAS; Uncharacterized protein
STRINGBostr.12659s0408.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151191619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25470.21e-111ERF family protein