PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0135.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 145aa    MW: 15828.4 Da    PI: 5.5425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0135.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-171161155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s+ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l++
  Bostr.12659s0135.1.p 11 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAIAHDVAFFCLHQ 61
                          89*****998.**********943...5*********************999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-91159IPR001471AP2/ERF domain
CDDcd000184.70E-281173No hitNo description
SuperFamilySSF541712.03E-171172IPR016177DNA-binding domain
SMARTSM003803.9E-331277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-251272IPR001471AP2/ERF domain
PROSITE profilePS5103221.4831271IPR001471AP2/ERF domain
PRINTSPR003676.5E-91324IPR001471AP2/ERF domain
PRINTSPR003676.5E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDYRDAGETQ SKYKGIRRRK WGKWVSEIRV PGTRDRLWLG SFSTAEGAAI AHDVAFFCLH  60
QPDSLESLNF PHLLNPSIAS KTSPRSIQQA ASNAGMAVDA GIVQSTSGNC GYGDTTTTYY  120
ENGADEVEPL NISVYDYLDG HDHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-13475676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0135.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866971e-157AY086697.1 Arabidopsis thaliana clone 26867 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460046.18e-94PREDICTED: ethylene-responsive transcription factor ERF019-like
RefseqXP_010498767.11e-93PREDICTED: ethylene-responsive transcription factor ERF019
RefseqXP_010498768.11e-93PREDICTED: ethylene-responsive transcription factor ERF019
SwissprotO805429e-93ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLR0IGV53e-91R0IGV5_9BRAS; Uncharacterized protein
STRINGBostr.12659s0135.1.p1e-105(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.14e-95ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]