PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0111.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18648.9 Da    PI: 9.986
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.8e-151150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          i+++  r vtf kR+ g+lKK +EL +LC+  ++ ii+s+
  Bostr.12659s0111.1.p 11 ISDNATRRVTFRKRKDGLLKKLNELTILCGLPACAIIYSE 50
                          899999*********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.647150IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-17160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-20185IPR002100Transcription factor, MADS-box
CDDcd002669.87E-20285No hitNo description
PRINTSPR004046.9E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGRRKVTHQL ISDNATRRVT FRKRKDGLLK KLNELTILCG LPACAIIYSE YKDGPELWPN  60
LNEVRSLLNR LSELPVEKQT KYMMDQKDLM NKMIQDAEKK LEKEKMHTRA MKLGMMASSS  120
DLTTDSDCSE ELAKAADVVD KKLKAIRERI KAVEAGAPII KRE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDNATRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0111.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065510.0AC006551.6 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence.
GenBankAY1412500.0AY141250.1 Arabidopsis thaliana MADS-box protein AGL87 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319062.11e-110AGAMOUS-like 87
TrEMBLQ7X9H11e-109Q7X9H1_ARATH; AGAMOUS-like 87
STRINGBostr.12659s0111.1.p1e-116(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.27e-93AGAMOUS-like 87