PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12302s0013.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 289aa    MW: 32308.2 Da    PI: 4.391
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12302s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11e-09134175445
                           XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                            k+ rr+ +NR AA rsR+RKk++++ Le+k+k Le e  +L
  Bostr.12302s0013.1.p 134 AKKRRRRVRNRDAAVRSRERKKEYVQDLEKKSKYLERECLRL 175
                           699*********************************997666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-13128193No hitNo description
SMARTSM003385.5E-5131195IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944133190IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-11135193No hitNo description
PfamPF077162.4E-9135177IPR004827Basic-leucine zipper domain
PROSITE patternPS000360138153IPR004827Basic-leucine zipper domain
CDDcd147041.45E-12149187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAEEFGSFDL LINDDFFFDF DPSIVIDSPP AEDFVRSSPD SLIVEIESKL MSDENQEEES  60
FVELDQRSVS DFIADLLVDY PISDSGTVDL ATEQVTAGKE TEGSDDSRKE KKSNDSGSEV  120
QDDDDDGDDD DAVAKKRRRR VRNRDAAVRS RERKKEYVQD LEKKSKYLER ECLRLGRMLE  180
CFVAENQSLR YCLQKGSGNN TSMMTKQESA VLLLESLLLG SLLWLLGVNI ICLFPYLSHT  240
KCYLLLSEPE GLVLNGLGSS SKPSTTGMSR GCKGSRPRMK HQILTLVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139KKRRRR
2135140KRRRRV
3135154KRRRRVRNRDAAVRSRERKK
4137154RRRVRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1338050.0AY133805.1 Arabidopsis thaliana clone U10320 putative bZIP transcription factor (At1g42990) mRNA, complete cds.
GenBankAY0459640.0AY045964.1 Arabidopsis thaliana putative bZIP transcription factor (At1g42990) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501843.11e-126PREDICTED: bZIP transcription factor 60-like
SwissprotQ9C7S01e-126BZP60_ARATH; bZIP transcription factor 60
TrEMBLR0GRD51e-125R0GRD5_9BRAS; Uncharacterized protein
STRINGAT1G42990.11e-124(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46342848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.11e-127basic region/leucine zipper motif 60