PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.11793s0064.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 275aa    MW: 30940.5 Da    PI: 4.4654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.11793s0064.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.6e-2013101197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffkv+   + ++s  + +p +f+e+   +   + t +l+ + g+ W+v +  +k +++ ++t+GW++F+++++L +g+f++F +dg+++
  Bostr.11793s0064.1.p  13 FFKVF--LSETASESFAIPLSFMEHLADP--LPNTAKLQGTGGKDWTVSM--TKIRDGAYFTAGWSKFAEDHELVDGEFLTFVYDGHQT 95 
                           89999..666666679*******666655..889****************..********************************99888 PP

                           E..EEEEE CS
                    B3  90 felvvkvf 97 
                           f   v+vf
  Bostr.11793s0064.1.p  96 F--EVSVF 101
                           8..77776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.23911104IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-2211105IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-1811101No hitNo description
Gene3DG3DSA:2.40.330.101.5E-2211103IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1613101IPR003340B3 DNA binding domain
SMARTSM010197.5E-2013104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-7176258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-5176259IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.067180269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MADNEDDLLL PRFFKVFLSE TASESFAIPL SFMEHLADPL PNTAKLQGTG GKDWTVSMTK  60
IRDGAYFTAG WSKFAEDHEL VDGEFLTFVY DGHQTFEVSV FGRLGCKETR AVAETIELSG  120
SSSDSEEGEE PSMDVDDDTS LGEDEEISQS IYPFEDEETE SDAAVFAGNL SIEALNNPHF  180
STTLKNRIYE LLIPANVVKE NKLRFGDSVK YIDEEGTLVG LRGKWADDRI CFKGWDRICR  240
RNRLKKHQDT VECELLHEKK KVHSIRIHVM RGTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-201210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293000.11e-170hypothetical protein CARUB_v10019277mg
SwissprotQ8LAV51e-127REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM71e-170R0HPM7_9BRAS; Uncharacterized protein
STRINGscaffold_502422.11e-143(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-123B3 family protein