PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0232.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 165aa    MW: 18195.6 Da    PI: 10.8873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0232.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-2080135155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +g+WvAeIr+ +  ++ +r r +lg+f taeeAa a+++a+ +l g
  Bostr.10273s0232.1.p  80 KKFRGVRQRP-WGKWVAEIRCGRGaRKgRRDRLWLGTFNTAEEAALAYDNAAIQLIG 135
                           59********.**********766666788**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.7E-341162IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000186.80E-2480142No hitNo description
Gene3DG3DSA:3.30.730.102.6E-2781142IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1981143IPR016177DNA-binding domain
PROSITE profilePS5103220.94381143IPR001471AP2/ERF domain
PfamPF008478.0E-1581135IPR001471AP2/ERF domain
SMARTSM003807.0E-3181149IPR001471AP2/ERF domain
PRINTSPR003674.7E-118293IPR001471AP2/ERF domain
PRINTSPR003674.7E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKRIIRISFT DAEATDSSSD EEATEKRGGT SSQTSRRRGK RLVKEIVIDP SDSADKFDVC  60
KTQFKIRIPA EFLAAAKERK KFRGVRQRPW GKWVAEIRCG RGARKGRRDR LWLGTFNTAE  120
EAALAYDNAA IQLIGPHAPT NFGFPAENQK AKTVVGASDV ARGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15781421171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0232.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565012.16e-97Integrase-type DNA-binding superfamily protein
SwissprotQ9C9955e-98ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A178WNZ81e-95A0A178WNZ8_ARATH; CRF8
STRINGBostr.10273s0232.1.p1e-116(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.13e-81ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]