PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0198.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 148aa    MW: 16091.7 Da    PI: 4.953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0198.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-171262155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s+ykG+r++k +g+Wv+eIr+p +   r+r +lg+f tae+Aa a++ a  +l+ 
  Bostr.10273s0198.1.p 12 SKYKGIRRRK-WGKWVSEIRVPGT---RQRLWLGSFSTAEGAAVAHDVAFYCLHR 62
                          89*****998.**********943...5*********************999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.18E-261276No hitNo description
SuperFamilySSF541718.5E-171274IPR016177DNA-binding domain
PfamPF008471.2E-81260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-241374IPR001471AP2/ERF domain
SMARTSM003808.8E-271380IPR001471AP2/ERF domain
PROSITE profilePS5103220.8371374IPR001471AP2/ERF domain
PRINTSPR003675.3E-91425IPR001471AP2/ERF domain
PRINTSPR003675.3E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDSRNAGETY QSKYKGIRRR KWGKWVSEIR VPGTRQRLWL GSFSTAEGAA VAHDVAFYCL  60
HRPSSLDDEA FNFPHLLSTS LASKRSPKSI QKAASDAGMA VDAGFNLNND GVVFGSGGCE  120
DGSSTTNMED DNELSISVYD YLEDDLA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0198.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-121AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-121AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0109991e-121BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankBT0148161e-121BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankCP0026841e-121CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471164.16e-95PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I83e-87ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLR0IDS01e-87R0IDS0_9BRAS; Uncharacterized protein
STRINGBostr.10273s0198.1.p1e-106(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-89ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]