PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10199s0106.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 246aa    MW: 26465.4 Da    PI: 10.2092
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10199s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.45.1e-3830138389
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasn 84 
                           +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++        ++s s     
  Bostr.10199s0106.1.p  30 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStasvsirGTNSTSL---- 114
                           79*************************************************************9999977732222221111111.... PP

                   TCP  85 sssg......................k 89 
                              +                      +
  Bostr.10199s0106.1.p 115 ---SssldhkpttllgsspfilgkrvR 138
                           ...123333335555444344332220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3435151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923589IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSNNSNNDGV MISSNGALIE QKQQQYSVVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF  60
QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSIRGTN STSLSSSLDH  120
KPTTLLGSSP FILGKRVRAD EDNNNNNNNS GGKDETFTTT PAGFWAVPAR PDFGQVWSFT  180
GAPQEMFLQQ HQQPLFVHQQ QQQQQAATGE ASAARVGNYL PGHLNLLASL SGGSPGSGRR  240
EEDPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10199s0106.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076480.0AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197719.11e-137TCP family transcription factor
SwissprotQ9FMX21e-138TCP7_ARATH; Transcription factor TCP7
TrEMBLD7M1Q21e-134D7M1Q2_ARALL; Uncharacterized protein
STRINGBostr.10199s0106.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-93TCP family protein