PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0697s0115.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 350aa    MW: 39174 Da    PI: 9.4824
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0697s0115.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.5e-18116165155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Bostr.0697s0115.1.p 116 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 165
                          78*******************......55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9116165IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-15116173IPR016177DNA-binding domain
PROSITE profilePS5103217.332117173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-16117172IPR001471AP2/ERF domain
CDDcd000181.74E-11117172No hitNo description
SMARTSM003801.6E-29117179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009658Biological Processchloroplast organization
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLDLNLKIFS SYEEDRDRKV PLMISTTGEE ESNSSSSTTD SAAGDAFITF GILKRDDDVV  60
PPPPHKETGD LFPVADARRN IEFSVEDSHW LNLSSLQRNT QKMVKKSRRG PRSRSSQYRG  120
VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAY AAARAYDRAA IKFRGLDADI NFVVDDYRHD  180
IDKMKNLNKV EFVQTLRRES ASFGRGSSKY KGLALQKCTQ FKTHDQIHLF QNRGWDAATI  240
KYNELGKGEG AMKCGAHIKG NAHNDLELSL GISSSSENIK LTTGDNYKGI NRSTMGLYGK  300
QSSIYLPMAT MKPLKTVAAS SGFPFITMTT SSSSMSNCFD PQDRLHSFN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00075ChIP-chipTransfer from AT3G54990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0697s0115.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762750.0AY576275.1 Arabidopsis thaliana AP2 domain transcription factor (SMZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427236.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
SwissprotQ6PV680.0SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBLD7LUZ70.0D7LUZ7_ARALL; Uncharacterized protein
STRINGBostr.0697s0115.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.10.0AP2 family protein
Publications ? help Back to Top
  1. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]