PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0236.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 493aa    MW: 54951.6 Da    PI: 6.6652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0236.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.2e-14230290156
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkklege 56 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g+
  Bostr.0568s0236.1.p 230 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWGH 290
                          57*******************666664478446**********99*************997 PP

2AP249.97.7e-16332383155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Bostr.0568s0236.1.p 332 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 383
                          57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-11230290IPR001471AP2/ERF domain
CDDcd000188.54E-22230298No hitNo description
SuperFamilySSF541716.54E-17230298IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-15231298IPR001471AP2/ERF domain
PROSITE profilePS5103219.006231297IPR001471AP2/ERF domain
SMARTSM003807.3E-28231303IPR001471AP2/ERF domain
PRINTSPR003673.9E-6232243IPR001471AP2/ERF domain
PfamPF008473.2E-10332383IPR001471AP2/ERF domain
CDDcd000181.38E-11332391No hitNo description
SuperFamilySSF541718.5E-18332392IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-18333391IPR001471AP2/ERF domain
PROSITE profilePS5103219.111333391IPR001471AP2/ERF domain
SMARTSM003807.9E-31333397IPR001471AP2/ERF domain
PRINTSPR003673.9E-6373393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLKS TDQSHFASYD ASSTPYLIDN FYVFKEEAEI EAAAASMADS  60
TTLSTFYDSH IHSQTQIPKL EDFLGDSFVR YSDTQTETQV SSSLTRFYDL RHHTVTGGDT  120
GFFSDHHHHD FKMVNSGSEI VDDSASNIGG THLSGHVVKS STTAELGFNG GATTGEALSL  180
AVNNNTSDQP LSCNNGERGE NSNKKTTVSK KETSDDSKKK IVETLGQRTS IYRGVTRHRW  240
TGRYEAHLWD NSCRREGQAR KGRQVYLGGY DKEDKAARAY DLAALKYWGH TATTNFPVMS  300
YSKELEEMNE MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY  360
LGTFATEEEA AEAYDIAAIK FRGINAVTNF EMNRYDVEAV MKSSFPVGGA AKRHKLAVES  420
PPSSDHNLQP HLLPSSFSTD VNPNSIPCGI PFESSVLYNH HNFFQHYPVV SDSTVQVPMN  480
QAEFFSWPNQ SY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0236.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608870.0AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865692.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
RefseqXP_020865696.10.0AP2-like ethylene-responsive transcription factor AIL7 isoform X1
SwissprotQ6J9N80.0AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLR0EWM60.0R0EWM6_9BRAS; Uncharacterized protein
STRINGBostr.0568s0236.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.10.0AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]