PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0752.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 100aa    MW: 11066.6 Da    PI: 9.0787
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0752.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.61.5e-31995186
               DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
                         +C aCk+ rr+C+++C++apyf  e+ +++fa+vh++FGasnv+k+l ++pe+er+da+ s++ eA+ar+r+P+y++v++ +k++  
  Bostr.0556s0752.1.p  9 PCRACKFFRRRCVAGCIFAPYFDYEKgAAHFAVVHRVFGASNVSKYLPNVPEHERQDAVVSICSEAQARLRNPIYSCVSFQQKVNYS 95
                         7***********************9989***************************************************99998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.553899IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-30995IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSSSVGGGPC RACKFFRRRC VAGCIFAPYF DYEKGAAHFA VVHRVFGASN VSKYLPNVPE  60
HERQDAVVSI CSEAQARLRN PIYSCVSFQQ KVNYSFHNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-292994100LOB family transfactor Ramosa2.1
5ly0_B5e-292994100LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0752.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456310.12e-40PREDICTED: LOB domain-containing protein 30-like
SwissprotO813234e-40LBD30_ARATH; LOB domain-containing protein 30
TrEMBLV4L2071e-38V4L207_EUTSA; Uncharacterized protein
STRINGBostr.0556s0752.1.p4e-67(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.12e-42LBD family protein
Publications ? help Back to Top
  1. Rast-Somssich MI, et al.
    The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin.
    J. Exp. Bot., 2017. 68(11): p. 2741-2755
    [PMID:28472464]
  2. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]