PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0446.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family LBD
Protein Properties Length: 129aa    MW: 14225.1 Da    PI: 7.7709
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0446.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.31.5e-448106199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC++dCv+apyfp e+p kfanvh++FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l
  Bostr.0556s0446.1.p   8 PCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILQEVAPHQREDAVNSLAYEAEARLNDPVYGCVGAISVLQRQVLRL 97 
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                          + el+++++
  Bostr.0556s0446.1.p  98 QRELEETNA 106
                          ****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.3427108IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-448105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSNYTNSPCA ACKFLRRKCT SDCVFAPYFP PEEPTKFANV HRIFGASNVS KILQEVAPHQ  60
REDAVNSLAY EAEARLNDPV YGCVGAISVL QRQVLRLQRE LEETNADLMR YASCLGGETT  120
STYGGRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-5961219125LOB family transfactor Ramosa2.1
5ly0_B1e-5961219125LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0446.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373361e-174AC237336.1 Arabidopsis lyrata clone JGIFAFI-69G3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292048.21e-90LOW QUALITY PROTEIN: LOB domain-containing protein 25, partial
RefseqXP_010425543.19e-91PREDICTED: LOB domain-containing protein 25
RefseqXP_010502770.19e-91PREDICTED: LOB domain-containing protein 25
SwissprotQ8L8Q32e-90LBD25_ARATH; LOB domain-containing protein 25
TrEMBLR0FRU72e-89R0FRU7_9BRAS; Uncharacterized protein
STRINGBostr.0556s0446.1.p1e-91(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.14e-79LOB domain-containing protein 25
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]