PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0124s0109.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 194aa    MW: 21048.7 Da    PI: 9.9281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0124s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-182776255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIr  +     +  r++lg+f+tae+Aa+a+++ +++++g
  Bostr.0124s0109.1.p 27 RYRGVRKRP-WGRYAAEIRNpF-----TkNRVWLGTFDTAEQAARAYDKTAREFRG 76
                         59*******.**********66.....349***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.87E-312784No hitNo description
SuperFamilySSF541713.6E-212785IPR016177DNA-binding domain
PROSITE profilePS5103223.4592784IPR001471AP2/ERF domain
PfamPF008471.8E-122776IPR001471AP2/ERF domain
SMARTSM003807.4E-332790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-302784IPR001471AP2/ERF domain
PRINTSPR003673.2E-112839IPR001471AP2/ERF domain
PRINTSPR003673.2E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTKMGLKTDP VSPTNPTHES NAATEIRYRG VRKRPWGRYA AEIRNPFTKN RVWLGTFDTA  60
EQAARAYDKT AREFRGSKAK TNFPTFLELN GKTDGGFVVN PSQSSTVVNS SSPTAARLVT  120
PPQLEFSLGG RGACRRIPVA RPVYYFNMTA FPKVTACGIQ SESETSSVVD FESGAGNISQ  180
PLDLDLNLAP PAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-192284972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00202DAPTransfer from AT1G53170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0124s0109.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305665.11e-100ethylene-responsive transcription factor 8
SwissprotQ9MAI56e-85ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLR0IN886e-99R0IN88_9BRAS; Uncharacterized protein
STRINGBostr.0124s0109.1.p1e-141(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.19e-70ethylene response factor 8
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]