PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast10G034900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 185aa    MW: 19583.4 Da    PI: 10.5177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast10G034900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00185575323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C  Cgk F++   L  H  +H
  Brast10G034900.1.p 55 CAVCGKAFPSYQALGGHKASH 75
                        **********99999998887 PP

2zf-C2H212.90.00034109129323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ Cgk F +   L  H r+H
  Brast10G034900.1.p 109 CNVCGKAFATGQALGGHKRRH 129
                         *******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-95175No hitNo description
PROSITE profilePS501579.9515380IPR007087Zinc finger, C2H2
SMARTSM003551.25375IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-125377IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-9102129No hitNo description
PfamPF139124.1E-11106131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.263107129IPR007087Zinc finger, C2H2
SMARTSM003550.37107129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4108129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAVEPVLEAA SASASASKRK RSRLPMAPSE EQQQLALWLL MLARGDREQE RLHGCAVCGK  60
AFPSYQALGG HKASHRKLLP QPSLQKPPQD VESASKSASG GGSGRAHLCN VCGKAFATGQ  120
ALGGHKRRHY DGTIGSAKAN RGFDLNLPAL PDMVVAADRR QDEVLLSPVS SSLEKKKPRL  180
VITA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579239.13e-81PREDICTED: zinc finger protein 1-like
SwissprotQ9SSW21e-32AZF2_ARATH; Zinc finger protein AZF2
TrEMBLI1IH354e-81I1IH35_BRADI; Uncharacterized protein
STRINGBRADI4G03410.11e-80(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-22zinc finger of Arabidopsis thaliana 6