PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G109900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 377aa    MW: 41742.6 Da    PI: 10.5445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G109900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004135156323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C  Cg++F+ +++L +H  t H
  Brast09G109900.1.p 135 CRVCGRRFRARDSLLHHFDTiH 156
                         *****************88877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.385133161IPR007087Zinc finger, C2H2
PROSITE patternPS000280135156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLLPCGSHRS AGPQVPRRRR SPRLPGEISR PMFPPLYNLR RRFLASTPKL LSKPLRYLST  60
TPSLTPASRS PTTPVDVLWD LAASRPPSKL PLYDAAVRLH LAASSFGRLR LSAAFLHPSH  120
RLPAPDPSAD STHLCRVCGR RFRARDSLLH HFDTIHTREH AKRLERIDSS RGDRRVRLAA  180
SLSLKLSKYT KAARELTAAA DPGSPADDLR RAGVRAELSR TPSASLLERA QEVLDQRSVG  240
CLMLVSAHEE LAPLLRLARL KGVRSVVVGG ESGLARWADV GFSWAEVVAG KARKAAPSVS  300
GKWRDRDVLK KLEWRYEEED EEEDVVFEED GDGDGSEKLA GSAKGKPWWK LESDGEQKGK  360
PWWKLESDLE GYRAGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G109900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312051.10.0uncharacterized protein LOC100824659
RefseqXP_024312052.10.0uncharacterized protein LOC100824659
TrEMBLI1IYK10.0I1IYK1_BRADI; Uncharacterized protein
STRINGBRADI5G12650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.14e-42C2H2 family protein