PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G094100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 147aa    MW: 15445.2 Da    PI: 8.0935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G094100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000133355123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C +C++ F+++  L  H++ H
  Brast09G094100.1.p 33 FACCYCPRKFRSSQALGGHQNAH 55
                        78******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.6E-53259No hitNo description
PROSITE profilePS5015710.0343360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDMGMGMERE EGLNLSLSLQ QSPTSPPRFQ AVFACCYCPR KFRSSQALGG HQNAHKLQRN  60
LARRGREATT ALSLAAAPPG DHQQAGKAAG ADDPPPRPAD PDEAWGGDGG RIRRHRLQGG  120
SGAASSGAGR GNEELADEMI DLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9704072e-51EU970407.1 Zea mays clone 344595 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581274.22e-59PREDICTED: uncharacterized protein LOC100830698
TrEMBLA0A0Q3E8Y43e-64A0A0Q3E8Y4_BRADI; Uncharacterized protein
STRINGBRADI5G11180.17e-59(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.17e-14zinc finger protein 2