PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G026300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 176aa    MW: 18173.5 Da    PI: 5.6697
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G026300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.11.3e-3349119272
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 
                          ++ +r+s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ s++++
  Brast09G026300.1.p  49 RPRARRSSDRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVSPEEA 119
                         57899***********************************************************8877743 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-2655116IPR005333Transcription factor, TCP
PROSITE profilePS5136924.71755109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MMSSSPSELV LYNLVPTQTL NPTAPPPTTD DPAADLSIAT ATAAAPSARP RARRSSDRHA  60
KVAGRGRRVR IPAMVAARVF QLTRELGHRT DGETIEWLLR QAEPSIIAAT GTGVSPEEAP  120
PAAVPIGSAP AVHGAPFVQV PYYTALLMQP PTADEPPAAP AAADSASVTV AEENN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0925361e-113FP092536.1 Phyllostachys edulis cDNA clone: bphylf049m10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581062.13e-96PREDICTED: transcription factor PCF1-like
SwissprotO238751e-65PCF1_ORYSJ; Transcription factor PCF1
TrEMBLA0A0Q3E6C74e-96A0A0Q3E6C7_BRADI; Uncharacterized protein
STRINGBRADI5G02880.11e-94(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141722627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-27TCP family protein