PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G002000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 307aa    MW: 31828.7 Da    PI: 6.2419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G002000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069208230123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F +   L  H+r+H
  Brast09G002000.1.p 208 HECSICGAEFASGQALGGHMRRH 230
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-8113136No hitNo description
PfamPF139129.7E-12113138IPR007087Zinc finger, C2H2
SMARTSM003550.18114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-8203230No hitNo description
PfamPF139121.3E-12207231IPR007087Zinc finger, C2H2
SMARTSM003550.016208230IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEAAAGGDIV VAKGKRSKRQ RAHAAAAPEV VTTPAADDSA GAAESSSLSS VVVAEEEEEA  60
ASGCVTEEEE DMAMCLMLLA RGGHGGSTSA AMAAEGNKKF RSRQREEGSG ELVYECRTCS  120
KRFPSFQALG GHRTSHKKPR LPTPKADSED LKKAPSMSPP PPSPTDPAAL LAIPAPATPP  180
PPAAMNPNPK QQRRDSTAMA TGGSSRVHEC SICGAEFASG QALGGHMRRH RPLVPAAAAA  240
SEGEEPTTAV RTKEKSLLEL DLNMPPSDDD VHGTTKPAAF VFNVNDLLFP APTSAPASAM  300
VVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4057779e-31CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence.
GenBankCT8336979e-31CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
GenBankCP0126129e-31CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankAP0149609e-31AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6066549e-31AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence.
GenBankAL6066039e-31AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence.
GenBankAK1086459e-31AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751110.11e-115PREDICTED: zinc finger protein ZAT5-like
TrEMBLI1IVF01e-115I1IVF0_BRADI; Uncharacterized protein
STRINGBRADI5G00530.11e-115(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-32C2H2 family protein