PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G002000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 307aa    MW: 31828.7 Da    PI: 6.2419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G002000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069208230123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F +   L  H+r+H
  Brast09G002000.1.p 208 HECSICGAEFASGQALGGHMRRH 230
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-8113136No hitNo description
PfamPF139129.7E-12113138IPR007087Zinc finger, C2H2
SMARTSM003550.18114136IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-8203230No hitNo description
PfamPF139121.3E-12207231IPR007087Zinc finger, C2H2
SMARTSM003550.016208230IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429208235IPR007087Zinc finger, C2H2
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEAAAGGDIV VAKGKRSKRQ RAHAAAAPEV VTTPAADDSA GAAESSSLSS VVVAEEEEEA  60
ASGCVTEEEE DMAMCLMLLA RGG`s\vl VE`s\vl VGSG ELVYECRTCS  120
KRFPSFQALG GHRTSHKKPR LPTPKADSED LKKAPSMSPP PPSPTDPAAL LAIPAPATPP  180
PPAAMNPNPK QQRRDSTAMA TGGSSRVHEC SICGAEFASG QALGGHMRRH RPLVPAAAAA  240
SEGEEPTTAV RTKEKSLLEL DLNMPPSDDD VHGTTKPAAF VFNVNDLLFP APTSAPASAM  300
VVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4057779e-31CU405777.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C113D03, full insert sequence.
GenBankCT8336979e-31CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence.
GenBankCP0126129e-31CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankAP0149609e-31AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAL6066549e-31AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence.
GenBankAL6066039e-31AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence.
GenBankAK1086459e-31AK108645.1 Oryza sativa Japonica Group cDNA clone:002-148-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751110.11e-115PREDICTED: zinc finger protein ZAT5-like
TrEMBLI1IVF01e-115I1IVF0_BRADI; Uncharacterized protein
STRINGBRADI5G00530.11e-115(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-32C2H2 family protein