PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G104100.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 506aa    MW: 56124.1 Da    PI: 6.122
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G104100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62e-11197225533
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                         k err+++NReAAr+sR+RKka++++Le+
  Brast08G104100.4.p 197 KTERRLAQNREAARKSRLRKKAYVQQLET 225
                         88*************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-7192239No hitNo description
SMARTSM003389.5E-5193252IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22195239IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.33E-7197238No hitNo description
PfamPF001709.1E-9197225IPR004827Basic-leucine zipper domain
PROSITE patternPS000360200215IPR004827Basic-leucine zipper domain
PfamPF141443.5E-27278352IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVQGEESSWR MASDRDRAVP FGQALAYGIQ VHAPAAPPAN FLELQPAAAA YFGELGEALI  60
HGTCAGVNPV MIEGDAHTKS AYLAARPPTL EIFPSWPMNH LQQPYSANSQ SVGSTDSSSA  120
QNTMSQAELV SPVSMRTDSG QQQEVLMVTI DDYNYNQGLG PAAAATVTAP SFQQHAGGQD  180
KRKHGSTRKD DKLLDPKTER RLAQNREAAR KSRLRKKAYV QQLETGRIRL QQIEQELQRG  240
RSQGLLTGGC SAPGDMSPGA VMFDMEYARW LDEDSKYMIE LQSALQAQIL DGNLGTIVEE  300
CLRHYDELFH LRGVLARSDV FHLMTGMWAT QSERCFLWMA GFRPSEILKM LTPQLDPLTE  360
QQLLGMFNLQ QSSEQAEEAL AQGLHQLHQS LADAVGAGPL NDGADVANYT SLMALALDRL  420
DNLESFYREA DNLRRQTLHR MRQILTTRQT ARCFLSIGEY HRHLRALSSI WAARPRENFI  480
MGENVSSTGT EFQVHQSQQN QFSGL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G104100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315091.10.0transcription factor TGAL5 isoform X2
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A2K2DA630.0A0A2K2DA63_BRADI; Uncharacterized protein
STRINGTraes_1DL_AFDF3B024.10.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-136bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]