PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G104000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 358aa    MW: 39479.7 Da    PI: 7.3497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G104000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-05190209120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C+ C+k+F+r  n++ H+
  Brast08G104000.1.p 190 FACHVCSKTFNRYNNMQMHM 209
                         78*****************9 PP

2zf-C2H213.60.0002276298123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C  Cgk+F  k + ++H +++
  Brast08G104000.1.p 276 FACRRCGKPFAVKGDWRTHEKNC 298
                         78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.39E-5186213No hitNo description
PROSITE profilePS5015710.346190217IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5190209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
PROSITE profilePS508688.217234250IPR003616Post-SET domain
SuperFamilySSF576673.12E-6260296No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6262296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVLRAACAME GRGGVRYFEW LKPASSPSTT PSTDHLQAVP GRGEHRSATM LCLPLLGRLG  60
AGEKRSPEIK PSVKEEASNI TEDDGADLNI GLPASGGYSS EELPAMAVDE EEDEETEEEE  120
LEEEEKPRHE IEMHKVELAA GVHSEMMVEG PPELCVGGEE ESSNGGVTPC RDRPYWIPTP  180
AQILIGAVQF ACHVCSKTFN RYNNMQMHMW GHGREYRKGP ESLKGTHATT LALLRLPCYC  240
CAPGCRNSVG HPRARPLKDF RTLQTHYRRK HGAKPFACRR CGKPFAVKGD WRTHEKNCGK  300
RWLCACGSDF KHKRSLNDHA RSFGAGHFHV SVAPLAAAAE AQGQPKERVI RFGQQCI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G104000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026581e-160AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566203.10.0protein TRANSPARENT TESTA 1
SwissprotQ9SGD15e-95ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0Q3IJL90.0A0A0Q3IJL9_BRADI; Uncharacterized protein
STRINGBRADI2G23870.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.12e-92WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]