PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G239300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 196aa    MW: 20627.3 Da    PI: 7.9386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G239300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0582103223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +Cp C ++F+++   + H+r H
  Brast07G239300.1.p  82 RCPVCERTFRTPKAAHGHMRAH 103
                         7*******************98 PP

2zf-C2H215.26.3e-05127149123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C +Cg+ F+++ +L  H  +H
  Brast07G239300.1.p 127 YECAHCGTQFPTRQSLGGHRASH 149
                         99**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.20381108IPR007087Zinc finger, C2H2
SMARTSM003550.04481103IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.18E-782149No hitNo description
PfamPF138940.001182103No hitNo description
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
PfamPF139123.9E-8126151IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907127151IPR007087Zinc finger, C2H2
SMARTSM003550.078127149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSSSTLVMSG AGHLVSSGAG AGGGGDDPSN NWPYKLPSSH ALDAAAAVLS NITIKKKKKL  60
QKKKPVAAGA GEEEGPLLIQ IRCPVCERTF RTPKAAHGHM RAHPGRAWRG MDPAPPPPPA  120
AAAGGRYECA HCGTQFPTRQ SLGGHRASHS GVPGCSELSR IMMQQQQAPR NVVVRPFDLN  180
ELPAPETEEE EEEEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15463KKKKKLQKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1GV764e-70I1GV76_BRADI; Uncharacterized protein
STRINGBRADI1G29820.11e-69(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.17e-10C2H2-like zinc finger protein